Alignment Overview

DECIPHER is excellent at quickly align thousands of input sequences while maintaining high accuracy. The examples below illustrate how to achieve excellent performance and scalability in a variety of common alignment scenarios:

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Align Sequences - Accurately align thousands of unaligned DNA, RNA, or amino acid (AA) sequences.

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Align Translation - Using a set of protein coding sequences, create a nucleotide or amino acid alignment by aligning their corresponding proteins.

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Align Synteny - Beginning from completed or draft genomes, find shared syntenic regions and align them quickly while accounting for inversions, rearrangements, and duplications.

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Align Profiles - Efficiently create a merged alignment from two sub-alignments that may contain millions of sequences.